MmuEX6107487 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180190640-180191372:-
Coord C1 exon
chr2:180191228-180191372
Coord A exon
chr2:180190905-180191045
Coord C2 exon
chr2:180190640-180190801
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGATTGTTCTCTGCCCATAGGAG
3' ss Score
10.41
5' ss Seq
GAGGTATCC
5' ss Score
7.59
Exon sequences
Seq C1 exon
ATGCAGACCCAATGTAGCTGGACGTCGCTGTGATACCTGTGCCCCGGGCTTCTATGGCTATCCTAGCTGTCGCCCCTGTGACTGCCATGAGGCAGGCACCATGGCTAGCGTGTGTGACCCCCTCACAGGCCAATGCCATTGCAAG
Seq A exon
GAGAACGTGCAGGGCTCAAGATGTGACCAGTGTCGCGTGGGGACCTTCTCCTTGGATGCTGCTAACCCCAAGGGCTGTACCCGCTGCTTCTGTTTCGGGGCCACAGAGCGCTGTGGGAACTCTAACCTCGCCCGCCATGAG
Seq C2 exon
TTCGTGGACATGGAGGGCTGGGTGCTGTTGAGCAGTGACCGGCAGGTGGTACCCCACGAGCATCGGCCTGAGATAGAGCTGCTGCACGCAGATCTGCGCTCTGTGGCTGACACTTTCTCAGAGCTGTACTGGCAGGCTCCGCCCTCCTATCTGGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'56-66,'56-65,57-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.0=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGGACGTCGCTGTGATA
R:
GCTCTGAGAAAGTGTCAGCCA
Band lengths:
255-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types