BtaEX6066266 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64900319-64901195:+
Coord C1 exon
chr13:64900319-64900395
Coord A exon
chr13:64900826-64900913
Coord C2 exon
chr13:64901078-64901195
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCTCCCTCCCCCAGGAG
3' ss Score
12.29
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
CTGAGCCCCCCAAGTCCGGGGTGAAAGAGAAGCGTAAGAAGGCAGCATCATTCCAGACGGTGTCCCAGCTGCACAAG
Seq A exon
GAGAACCTCAACAAGCTGATGACCAATCTGCGGGCCACGCAGCCCCACTTTGTCCGTTGCATCGTCCCAAATGAGAACAAGACCCCAG
Seq C2 exon
GGGTCATGGACGCCTTCCTGGTGCTGCACCAGTTGCGCTGCAATGGGGTGCTGGAGGGGATCCGGATCTGCCGACAGGGGTTCCCCAACAGGCTGCTCTACACTGACTTCCGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.7=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTCCGGGGTGAAAGAGA
R:
CAGTGTAGAGCAGCCTGTTGG
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]