GgaEX0004106 @ galGal3
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2597585-2599841:-
Coord C1 exon
chr20:2599765-2599841
Coord A exon
chr20:2598142-2598229
Coord C2 exon
chr20:2597585-2597702
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCCCATGTCTGCCCTACAGGAG
3' ss Score
10.08
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
Seq A exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
Seq C2 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'23-22,'23-21,24-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCAGGGTCCAAGGAGA
R:
TGCGTAGAGGATCCTGTTGGG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]