GgaEX0004106 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2953378-2955634:-
Coord C1 exon
chr20:2955558-2955634
Coord A exon
chr20:2953935-2954022
Coord C2 exon
chr20:2953378-2953495
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCCCCATGTCTGCCCTACAGGAG
3' ss Score
10.08
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
AGGAACCTCACAAACCAGGGTCCAAGGAGAAACGTAAGAAGGCAGCTTCCTTCCAAACAGTGTCCCAGCTGCACAAG
Seq A exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
Seq C2 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'17-15,'17-14,18-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.6=100)
A:
PF0006316=Myosin_head=FE(5.3=100)
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCAGGGTCCAAGGAGA
R:
TGCGTAGAGGATCCTGTTGGG
Band lengths:
172-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]