DreEX6091847 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24966802-24967804:-
Coord C1 exon
chr11:24967728-24967804
Coord A exon
chr11:24967262-24967349
Coord C2 exon
chr11:24966802-24966919
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCCTCCAACTATAGGAA
3' ss Score
8.72
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTTCTGACCCAAAAACAGGGGGCAAGGAAAAGAGAAAAAAGGCTGCCTCCTTCCAGACAGTGTCACAGCTGCACAAG
Seq A exon
GAAAATCTCAACAAGCTGATGACAAATTTACGAAGCACTCAGCCACATTTTGTCCGCTGCATCATTCCCAATGAAACCAAAACACCAG
Seq C2 exon
GGATCATGGATTCTTTCATGGTTCTGCATCAATTGCGCTGTAATGGAGTCCTGGAAGGCATACGCATTTGCAGGAAGGGATTTCCAAACAGAATGCTTTATGCTGAATTCAAACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'19-23,'19-21,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(4.2=100)
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAAACAGGGGGCAAGGAA
R:
AAGCATTCTGTTTGGAAATCCCT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]