BtaEX6066795 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74068198-74076214:-
Coord C1 exon
chr13:74076067-74076214
Coord A exon
chr13:74070159-74070285
Coord C2 exon
chr13:74068198-74069225
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCCGGTCTTTGCCTGCAGGGC
3' ss Score
9.39
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGCTCTGAAGGAGGAAGGCAATGAGCTTGTAAAGAAGGGGAACCATAAGCAAGCGATTGAGAAGTACAGTGAGAGCCTCTGGTTTAGTAACTTGGAATCCGCCACATACAGCAACAG
Seq A exon
GGCACTCTGCCATCTGGAGCTGAAGCAGTTCCAGGAGGCGGTAAAGGACTGCACAGAAGCCCTCAGGCTGGATGGAAAGAACGTGAAGGCGTTCTACCGCCGGGCTCAAGCCTACAAGGCTCTCAAG
Seq C2 exon
GACTTCAGATCCAGCTTTGCAGACATCGACAGTCTCCTGCAGATAGAGCCTAGGAATGGCCCTGCGCAGAAGTTGCGGCAGGAGGTTAACCGGAGCTTAAACTAAAATCCCTGAAGGGCAGCAGGACACCTGTCTGCCTGAGCACCTTATTCTGTGCCTGCTCCTGGATCTGGCGGGCCCGAGTGGGCTCCGAAGCCCCCTCCTCTCCCCCAGAGACGTGATGGCCTCCCACCCCTCAGGAGGCTCTGCCTGTTCACATTAAGCTCAGTGTAGTCAGAAAGCAGACGTTTTGTTGGCAAAGTCTCCCCCTGTTCTGCACTCCCCTGTGCTGTGGACAGCGAGCAGGTCACAGCAACGGGTGCTTGTCAGCAGCATGCTCAGCCTGGTCTCTGCCCAGATGCTCCAGACCCACTGCTGCCCTTCCAGTCACCAGGTCCTGTCACCCTGATCCATCTGGGTGCTTAAAAAGCTGCCAGTCCCATGGGACACAGGCTGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256-'9-13,'9-9,10-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.420 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=84.0)
A:
PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
C2:
PF148531=Fis1_TPR_C=PD(67.3=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAGGCAATGAGCTTGT
R:
CTCAGGCAGACAGGTGTCCT
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]