MmuEX6106812 @ mm9
Exon Skipping
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:163879276-163884549:-
Coord C1 exon
chr2:163884402-163884549
Coord A exon
chr2:163880437-163880563
Coord C2 exon
chr2:163879276-163880243
Length
127 bp
Sequences
Splice sites
3' ss Seq
CGATGGCCTTTCTGCATCAGAGC
3' ss Score
4.89
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAAAGCTCTGAAGGAAGAAGGCAATGACCTTGTAAAGAAGGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAGAGCCTCTTGTGTAGTAGCCTGGAGTCTGCCACATACAGCAACAG
Seq A exon
AGCGCTCTGTCACCTGGTCCTGAAGCAGTACAAGGAGGCAGTAAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCACTCAAG
Seq C2 exon
GACTATAAGTCAAGCCTTTCGGATATCAGCAGCCTCCTACAAATTGAACCCAGGAATGGCCCTGCACAGAAGTTACGGCAGGAAGTTAACCAGAACATGAACTAAACCGTAGAGGGCAACAGGGACCCTGAACTTGACCTTCCCAGAGAAGCCAGGGCCTCCCTTGCATCTGCCCCAATGCCCAGCATGCCGCCAAGGGAGTGCAAAATCAACCCCACTTTGACTCCTTGGAGAGGTAGCAGCCTTTCACCTGACACATTTTACTTGTTCAGATTAAGTCCATTACAGACAAGCACAGGACTCTTTTTTTTTTTCTTCTTTTTTTTTTCCAGAAAGGTCCCCACTAGAGGTTTTTGTTTTGTTTTATTTTTAATTTAAAAAAGCGTGACGCCAACAGCCCTGGCCTCATTCGCTTGCTTCTGCCTGGCCCTTGTCAACACAGTCCTTGGCAACTGTCCCTGACCCAGATATGCACAGACTGGGTGCCTGTGACTTCCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=0.000 C2=0.441
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=84.0),PF0499812=RNA_pol_Rpb1_5=FE(31.0=100)
A:
PF134141=TPR_11=PD(36.8=58.1),PF0499812=RNA_pol_Rpb1_5=FE(26.6=100),PF148531=Fis1_TPR_C=PU(27.1=30.2)
C2:
PF0499812=RNA_pol_Rpb1_5=PD(20.3=91.4),PF148531=Fis1_TPR_C=PD(68.8=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTAGCCTGGAGTCTGCCAC
R:
TGGGGTTGATTTTGCACTCCC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: