RnoEX0092724 @ rn6
Exon Skipping
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160448298-160453110:-
Coord C1 exon
chr3:160452963-160453110
Coord A exon
chr3:160449428-160449554
Coord C2 exon
chr3:160448298-160449236
Length
127 bp
Sequences
Splice sites
3' ss Seq
CAATGGTCTTTCTGCATCAGAGC
3' ss Score
4.91
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGCCTTCTGCTGGGGATGTGGAGAGAGCCAGAGTTCTGAAGGAAGAAGGCAATGAGCTTGTAAAGAAAGGCAACCATAAGAAAGCTATTGAGAAGTACAGTGAAAGCCTCTTGTTTAGTAGCCTGGAATCTGCCACATACAGCAACAG
Seq A exon
AGCGCTATGTCATCTGGTCCTGAAGCAGTACAAGGAGGCAGAGAAGGACTGCACAGAAGCCCTCAAGCTGGATGGGAAGAATGTAAAGGCCTTTTACAGACGCGCTCAAGCCTACAAGGCACTCAAG
Seq C2 exon
GACTATAAATCCAGCCTTGCGGATATCAGCAGCCTTCTACAGATTGAACCCAGGAATGGCCCTGCACATAAGCTACGGCAGGAGGTTAACCAGAACATGAACTAAAACCATGAGAGAGCAACAGGAACCCTGAACTTGACCTTCCCAGAGAAGCTAGGACCTCCCCTGCATCTGCCCCTGATACCCAGCATGCCGCCAAGGGAGTGCAAAATCAACCCCACTTTGACTCCTTGGAGAGGTAGCAGCCTTCCACTGAGAAGTTTTGCTTGTTCAGATTAAGTCCATTACAGACAAGCACAGGACTCTTTCTCTTTTTTTCTAGAAAGGTCCCCATTAGAGTTTTAAAAAGTGTGAAGCCACAGCCCTGGCCTCATCCGCTTGCTTCTGCCTGGCCCTTGTTAACAAAGTACTTGGCAATTGTCCCAGACCCAGATGTGCCTCAGACTGAGTGCCCTGTGGCTTCCCAGACACCATGCCTCTGCAGTTCACCTGAGCTGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799-'8-14,'8-11,9-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.000 C2=0.441
Domain overlap (PFAM):
C1:
PF0499812=RNA_pol_Rpb1_5=FE(30.8=100),PF134141=TPR_11=PU(61.8=84.0)
A:
PF0499812=RNA_pol_Rpb1_5=FE(26.4=100),PF134141=TPR_11=PD(36.8=58.1),PF148531=Fis1_TPR_C=PU(28.6=32.6)
C2:
PF0499812=RNA_pol_Rpb1_5=PD(20.1=91.4),PF148531=Fis1_TPR_C=PD(67.3=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGCCTGGAATCTGCCACA
R:
TGGGGTTGATTTTGCACTCCC
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]