DreEX0080531 @ danRer10
Exon Skipping
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52226683-52227880:-
Coord C1 exon
chr6:52227733-52227880
Coord A exon
chr6:52227488-52227614
Coord C2 exon
chr6:52226683-52227407
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAATCAATATTTGCTTGTAGAGC
3' ss Score
4.47
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CACCAGGACCAGACGCTGTTAAAAAGGGCAGAACTTTAAAGGAAGAAGGCAACGCACTTGTGAAGAAGGGGGAACACAAGAAAGCCATGGAGAAGTACACACAGTCACTTGCTCAAGACCCCACAGAAGTCACAACCTACACAAACAG
Seq A exon
AGCTCTCTGCTATCTAGCCTTAAAGATGTACAAAGATGCGATTAGGGACTGCGAGGAGGCTCTTCGATTGGATTCTGCCAACATTAAAGCCCTTTACAGACGTGCCCAGGCATACAAGGAACTCAAA
Seq C2 exon
AACAAGAAGTCTTGTATTGAGGATCTCAATAGCGTACTCAAAATCGATCCAAACAACACAGCAGTGCAGAAGCTCCTGCAGGAAGTACAGAAGATGAAATGACTGCGAGTGTGATGTGGACACGAGGAAACTTCCCCCCCCAAGTGCCTCGTTGATTTGCCTTTCTGAGCTGCAACATTTGCTGTAAACTTCAGATATGCACATACATCATCATTTAAAACCCTTCACGTTAATATAGGAGCACTTGATTGGATGCTTTTTTTGCCATCGATACGCTATTGGCAGTCAAGTTTAAATTTGAAACTCCATCCTGTACTTGATTTGGTCAAACATGTTACCACTTAATTGATCTTTAATCAAACTTCAGCGTGATTTAGCATGTGATTTGTTTTTTTTAATGTGGAATTATTTGCACATTGAACTGAATGCCTCATTCATTTTAACCTATTTCTACTGTTTCTCTTTAGACTTGAAGTTCAAATAGGCAAATAGTTTTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.740 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=84.0)
A:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
C2:
PF0051523=TPR_1=PD(52.9=52.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAACACAAGAAAGCCAT
R:
TGTTGCAGCTCAGAAAGGCAA
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]