BtaEX6067944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003600 | MGC151839
Description
Bos taurus calpain 8 (CAPN8), mRNA. [Source:RefSeq mRNA;Acc:NM_001081619]
Coordinates
chr16:27709335-27711718:-
Coord C1 exon
chr16:27711585-27711718
Coord A exon
chr16:27710369-27710537
Coord C2 exon
chr16:27709335-27709418
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCTCGTCCAACAGGCT
3' ss Score
10.63
5' ss Seq
GACGTGAGC
5' ss Score
5.28
Exon sequences
Seq C1 exon
TTCTGGCAGTATGGAGAGTGGGTGGAGGTGGTCGTGGACGACAGGCTCCCCACCAAGAATGGAAAGCTGCTCTTCCTGCATTCCGAAGAAGGCAGTGAATTCTGGAGCGCACTGCTGGAGAAGGCCTATGCCAA
Seq A exon
GCTCAACGGTTCTTACGAGGCTCTCACTGGAGGGTCCACGGTGGAGGGGTTTGAGGATTTCACAGGTGGCATCTCTGAGTTTTATAACCTGAAGAAGCCACCGGCCAGTCTGTTCCAAATCATCCAGAAGGCCCTCCGCTCGGGGTCTCTGCTGGCCTGCTCCATTGAC
Seq C2 exon
ATCTCCAGTGCAGCCGAAACGGAAGCCATCACCAGCCAGAAGCTGGTTAAGGGTCACGCATACTCTGTCACAGGAGTTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003600-'7-8,'7-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGTATGGAGAGTGGG
R:
CTCTTCAACTCCTGTGACAGAGT
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]