HsaEX6036920 @ hg38
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr1:223625805-223628142:-
Coord C1 exon
chr1:223628009-223628142
Coord A exon
chr1:223626989-223627157
Coord C2 exon
chr1:223625805-223625888
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCTTTTCCAATAGGCT
3' ss Score
11.69
5' ss Seq
GATGTGAGG
5' ss Score
4.17
Exon sequences
Seq C1 exon
TTCTGGCAGTACGGAGAGTGGGTGGAGGTGGTCATTGACGACAGGCTGCCCACCAAGAATGGACAGCTGCTCTTCCTACACTCGGAACAAGGCAATGAATTCTGGAGTGCCCTGCTGGAGAAAGCCTATGCCAA
Seq A exon
GCTTAATGGTTGTTATGAGGCTCTCGCTGGAGGTTCCACAGTGGAGGGGTTTGAGGATTTCACAGGTGGCATCTCTGAGTTTTATGACCTGAAGAAACCACCAGCCAATCTATATCAGATCATCCGGAAGGCCCTCTGTGCGGGGTCTCTGCTGGGCTGCTCCATTGAT
Seq C2 exon
GTCTCCAGTGCAGCCGAAGCCGAAGCCATCACCAGCCAGAAGCTGGTTAAGAGTCATGCGTACTCTGTCACTGGAGTCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGTACGGAGAGTGG
R:
CTCTTCGACTCCAGTGACAGA
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains