BtaEX6068011 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29106954-29119937:+
Coord C1 exon
chr16:29106954-29107056
Coord A exon
chr16:29109038-29109265
Coord C2 exon
chr16:29119731-29119937
Length
228 bp
Sequences
Splice sites
3' ss Seq
TACTCACATCTGTTTTAAAGATT
3' ss Score
5.05
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTTAATAGTCCAGATGTGACAATAGAGCCTAAGTTCAGGCTATGGTTAAGCTCAAAATCAGACAGTTCTTTCCCAATTCCTATCCTTCAAAAGAGTTTAAAG
Seq A exon
ATTGCAGTGGAAAATCCCCAGGGACTGAAAAATAATTTACTTCAGACATTTGGATACAGTGGGAGTGGAGAGATAACAGAAGAATTATTTGAAAAACCTGACTATGGACCATGGTGGAAAAAAATTTTATTCAGCTTGTGTTTCTTCAATGCTCTGATCAATGAAAGAAAAATTTATGGAATATTGGGCTGGAATATTGCATATGCATTTAGTTCTTCAGACTTGGAG
Seq C2 exon
GTTGCCATAAAGGTGTTGGAAAATTTCCTGAGTGCTCAATCCAGTATTCCTTGGCAGACACTGCGCTACCTGATTGGGGAGGTGGTTTACGGTGGCTGGGTGACTGACAGCTGGGACAGGCGATGTTTAAACACCCTTCTCTACAAATTTTGTAATCCCGAAGTGCTAAAAGATGACTTCAGTTTCTCTACCGATGAGGTAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'34-34,'34-32,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
PF0302810=Dynein_heavy=FE(12.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGATGTGACAATAGAGCCT
R:
ACCTCATCGGTAGAGAAACTGA
Band lengths:
296-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]