HsaEX0020135 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225552494-225562579:+
Coord C1 exon
chr1:225552494-225552596
Coord A exon
chr1:225555507-225555734
Coord C2 exon
chr1:225562390-225562579
Length
228 bp
Sequences
Splice sites
3' ss Seq
TACTCACATCTGTTTTCAAGATT
3' ss Score
4.64
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTTTAATAGTCCAAACGTGACAATAGACCCTGAGTTTCGGCTATGGTTAAGCTCAAAATCATACAGTTCTTTTCCAATTCCTGTTCTTAAAAAGGGTTTAAAG
Seq A exon
ATTGCCGTGGAATCTCCCCAGGGATTGAAAAGTAACTTACTTCAGACATTTGGATGTACTGGGAGTGGAGAGGTAACAGAAGAGATATTTGAAAATCCTGACTGTGGACAATGGTGGAAAAAACTTTTATTTAGCCTATGTTTTTTCAATGCTGTAATCAATGAAAGAAAAAATTACGGAATATTGGGCTGGAATATTGCTTATAAATTTAATTCTTCAGACTTGGGG
Seq C2 exon
GTTGCCATTAAGGTGTTGGAAAATTCCCTGAGAGGACAGCCCAGCATTTCGTGGCAAGCACTGCGCTACCTGATTGGAGAAGTGATTTACGGTGGCCGGGTGATTGATAATTGGGACAAGCGATGCTTGAAGACCCTACTCTACAAATTTTGTAATCCTGAAGTGCTGAAAGATGACTTCAGTTTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
PF0302810=Dynein_heavy=FE(12.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAACGTGACAATAGACCCT
R:
GGAGAAACTGAAGTCATCTTTCAGC
Band lengths:
284-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)