HsaEX0020135 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225364792-225374885:+
Coord C1 exon
chr1:225364792-225364894
Coord A exon
chr1:225367805-225368032
Coord C2 exon
chr1:225374688-225374885
Length
228 bp
Sequences
Splice sites
3' ss Seq
TACTCACATCTGTTTTCAAGATT
3' ss Score
4.64
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTTTAATAGTCCAAACGTGACAATAGACCCTGAGTTTCGGCTATGGTTAAGCTCAAAATCATACAGTTCTTTTCCAATTCCTGTTCTTAAAAAGGGTTTAAAG
Seq A exon
ATTGCCGTGGAATCTCCCCAGGGATTGAAAAGTAACTTACTTCAGACATTTGGATGTACTGGGAGTGGAGAGGTAACAGAAGAGATATTTGAAAATCCTGACTGTGGACAATGGTGGAAAAAACTTTTATTTAGCCTATGTTTTTTCAATGCTGTAATCAATGAAAGAAAAAATTACGGAATATTGGGCTGGAATATTGCTTATAAATTTAATTCTTCAGACTTGGGG
Seq C2 exon
GTTGCCATTAAGGTGTTGGAAAATTCCCTGAGAGGACAGCCCAGCATTTCGTGGCAAGCACTGCGCTACCTGATTGGAGAAGTGATTTACGGTGGCCGGGTGATTGATAATTGGGACAAGCGATGCTTGAAGACCCTACTCTACAAATTTTGTAATCCTGAAGTGCTGAAAGATGACTTCAGTTTCTCCAGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(5.4=100)
A:
PF0302810=Dynein_heavy=FE(12.0=100)
C2:
PF0302810=Dynein_heavy=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAAACGTGACAATAGACCCT
R:
CCCATCACTGGAGAAACTGAAGT
Band lengths:
293-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development