RnoEX6045763 @ rn6
Exon Skipping
Gene
ENSRNOG00000051880 | AABR07021996.1
Description
NA
Coordinates
chr13:101949471-101956935:+
Coord C1 exon
chr13:101949471-101949573
Coord A exon
chr13:101953463-101953690
Coord C2 exon
chr13:101956738-101956935
Length
228 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTTTTTAAAGATT
3' ss Score
9.65
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTTAGTAGTCCAGATATGGTGCTAGATCCTGACTTTAGGCTCTGGCTGAGCTCAAGAGCCTATGGCTTTTTCCCAATTACGATTCTTCAGAAGGGCGTGAAG
Seq A exon
ATTGCTGTGGAACCTCCCCAGGGATTGAAAAGCAATTTACTTCAAATGTTTGGCTATGGTGGAAGTGGAGAGGTGACAGAAGAGGTGTTTGATAAGCCTGATTGTGGACCATGGTGGAAAAAAATTCTCTTCAGCCTCTGTCTTTTCAGTGCTGTGCTCAATGAAAGGAAAGCGTATGGAACACTGGGCTGGAACATCCCTTACCAATTCAGTTCCTCAGACCTGGAG
Seq C2 exon
GTGTCCATAAAGGTGCTCGCAAATGTCCTCTCCGGTCAGTCAGAAGTCCCATGGAAGGAAGTGAACTACCTGATCTCGGAAGTGACCTACGGTGGCCGGGTGACTGATGAATGGGACAAGCGATGCCTGAAGGCTCTTTTCTACAAATTCTGCAATCCTGAAATACTAAAGGATAACTTCAGTTTCTCTAGCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051880-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCAGATATGGTGCTAGATCCT
R:
CACATTGCTAGAGAAACTGAAGTT
Band lengths:
294-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]