BtaEX6068014 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29087419-29096478:+
Coord C1 exon
chr16:29087419-29087434
Coord A exon
chr16:29090290-29090375
Coord C2 exon
chr16:29096322-29096478
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTAAATTTTATCTAGCTC
3' ss Score
6.83
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
TCACTATATCCTGGCT
Seq A exon
CTCAAGTTTTTAATGAAAATGAAGAAATATACAGTTCTATAAATTTTCCCTGGGAGAAACTCACTCCATTTCAAAGACTTATTTTG
Seq C2 exon
ATAAAAATTCTTAGACCAGAATGTTTAAAGAATTCTGTGGAAAGGTTTATAACTGAAAAAATAGGAAATGAATATATTCACAGCACTGGAACCAGTTTGAAGGAATCATATGAAGAATCCAATGCCAGGACTCCACTAATACTTATTCACTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449-'30-29,'30-28,31-29=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(0.8=100)
A:
PF0302810=Dynein_heavy=FE(4.5=100)
C2:
PF0302810=Dynein_heavy=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]