MmuEX7000627 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181773724-181783711:+
Coord C1 exon
chr1:181773724-181773960
Coord A exon
chr1:181775343-181775428
Coord C2 exon
chr1:181783555-181783711
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTGATGGCATCTAGCTG
3' ss Score
4.04
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTATATTTGAAATACGGAGAAATGGCCATCTCCAGTGGGTACCGGACCTGAGGTGGAGGCAGTGCCAGTATATCAGCAATCAAATGGAGCCCTTCTCCCTTCTGTGCACGTCCCTCCTGTCCAATGAGCAGCAGTGGAATGCCTTCAAGGATGCTATGGCCGTGTACTCTCTAATGAGCAGGCCTTTCTTCTCAGATGCACCTTTGCCTCAGAAAAAACCCAGATCAGCAAAGGAAG
Seq A exon
CTGAACTTCTGGATGAAAGCGATGAAATGTTGGATCCTGTAACTTTTCCTTGGGAAAAGCTCACTCAATTTCAAAGGCTTATCTTG
Seq C2 exon
ATTAAAATTCTTCGACCAGACCGTTTAGAAAATTCAATTAAGAAATTTATAACTGAAAAAATGGGAGGTGAATATATCCCTGACACTACAGTTAATCTGAAAGAGTCGTTTAGCGAGTCTACTGCTCAAACTCCACTGATCCTCACCCACTCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369-'82-93,'82-92,91-93=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(12.1=96.2)
A:
PF0302810=Dynein_heavy=FE(4.4=100)
C2:
PF0302810=Dynein_heavy=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCCCTTCTGTGCACGTC
R:
TCTAAACGGTCTGGTCGAAGA
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types