HsaEX0020134 @ hg19
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225539349-225546354:+
Coord C1 exon
chr1:225539349-225539585
Coord A exon
chr1:225541505-225541590
Coord C2 exon
chr1:225546198-225546354
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTAAATTATATCTAGCTG
3' ss Score
5.88
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCACATTTGAAATAGGTGAAAGTCAACATCTTCAGTGGCTGTCAGATTCCAGGTGGAGGCAGTGCCAATATGTCAGCACTCACCTGGAACCATTTTCACTTCTGTGCAAATCCCTTTTATCAAACGTATCACAATGGGATACTTTTAAGAACAGTAAAGCAGTTTATTCTCTGATCAGCACACCTTTCTCTTCAGAAAATGCTTCATTGGAGGAAAATACAAAACCACCAGAGGAAA
Seq A exon
CTGAACTTTTGAATGAAAATAAAGAAACGTGTAATCCTATAAATTTTCCCTGGGAGAAACTCACTTCATTTCAAAGACTTATTTTG
Seq C2 exon
GTAAAAGTTCTTAGACCAGAAAGTTTAAACAATTCAGTGAGAAAGTTTATAACTGAAAAAATGGGAAATAAGTATCTTCAAAGAACTGGAGTTAATTTGAAAGATGCATATAAAGGATCCAATGCCAGAACTCCGCTGATACTTATTCAAACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.241 C2=0.023
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(12.3=96.2)
A:
PF0302810=Dynein_heavy=FE(4.5=100)
C2:
PF0302810=Dynein_heavy=FE(81.2=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAAAATACAAAACCACCAGA
R:
ATCAGCGGAGTTCTGGCATTG
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)