HsaEX0020134 @ hg38
Exon Skipping
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225351647-225358652:+
Coord C1 exon
chr1:225351647-225351883
Coord A exon
chr1:225353803-225353888
Coord C2 exon
chr1:225358496-225358652
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTAAATTATATCTAGCTG
3' ss Score
5.88
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GCACATTTGAAATAGGTGAAAGTCAACATCTTCAGTGGCTGTCAGATTCCAGGTGGAGGCAGTGCCAATATGTCAGCACTCACCTGGAACCATTTTCACTTCTGTGCAAATCCCTTTTATCAAACGTATCACAATGGGATACTTTTAAGAACAGTAAAGCAGTTTATTCTCTGATCAGCACACCTTTCTCTTCAGAAAATGCTTCATTGGAGGAAAATACAAAACCACCAGAGGAAA
Seq A exon
CTGAACTTTTGAATGAAAATAAAGAAACGTGTAATCCTATAAATTTTCCCTGGGAGAAACTCACTTCATTTCAAAGACTTATTTTG
Seq C2 exon
GTAAAAGTTCTTAGACCAGAAAGTTTAAACAATTCAGTGAGAAAGTTTATAACTGAAAAAATGGGAAATAAGTATCTTCAAAGAACTGGAGTTAATTTGAAAGATGCATATAAAGGATCCAATGCCAGAACTCCGCTGATACTTATTCAAACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.241 C2=0.023
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(12.3=96.2)
A:
PF0302810=Dynein_heavy=FE(4.5=100)
C2:
PF0302810=Dynein_heavy=FE(81.2=100),PF0302810=Dynein_heavy=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGAAAATACAAAACCACCAGA
R:
ATCAGCGGAGTTCTGGCATTG
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development