BtaEX6068385 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38051806-38055993:-
Coord C1 exon
chr16:38055808-38055993
Coord A exon
chr16:38054777-38054896
Coord C2 exon
chr16:38051806-38051836
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTTTGTTTTACAGCAG
3' ss Score
10.49
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGTCAAATGCGCCAAGCTACCTGTTACTGAGCCAATAGTGATGAACTGCTCCAACCCTTGGGGAAATTTCAGCTATGGATCAACCTGCAGCTTCCATTGCCCAGAGGGTCAATTACTTAATGGCTCAGAAAGAACAGTATGCCAAGAGAATGGTCAGTGGTCAACGACCATGCCAACCTGTCAAG
Seq A exon
CAGGGCCACTGACTATCCAGGAAACCCTGACTTATGTTGGTGGAGCAGCAGCTGGTACAACAGGCTTAGTGACGGGTTCAATTCTCCTGGCTCTGCTAAGAAGGCGTTGCAGACAAAAAG
Seq C2 exon
ATGATGGAAAAAGCCCCTTGAACCCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755-'17-15,'17-13,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.636
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCCAAGCTACCTGTTACTG
R:
GGGTTCAAGGGGCTTTTTCCA
Band lengths:
202-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]