GgaEX6043547 @ galGal4
Exon Skipping
Gene
ENSGALG00000002643 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3699262-3700093:+
Coord C1 exon
chr8:3699262-3699447
Coord A exon
chr8:3699567-3699686
Coord C2 exon
chr8:3700063-3700093
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTGGGTCTCTTTCAGAGG
3' ss Score
8.51
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
CCGTCAGCTGTCCAGTGCTGGATGTCCCCAGCCACAGCCACCTCAGCTGCTCTAATCTGCACGGGAACTTCACGTTCAACTCCACTTGCACCTTTTCCTGCAAGGAAGGATTTATCCGGGTGGGAGCGGAGATGCTCAGGTGTGCAGCCACGGGGAACTGGACCAGACATCCCCCAGTCTGTGAAG
Seq A exon
AGGATTCTGCCTTTTTGAAACAAGTTCTGGTTTACACCAGCACCAGTGCTCTGGCAGCAGCCGGCCTTGTGCTCTCTGGAACGCTCATTGTCTTGCTTGTCAAGCAGCTCAGCAACAGAG
Seq C2 exon
AGGAGAAGAAGAAGCTCCTGAGCCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643-'22-15,'22-14,23-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAGCTGTCCAGTGCT
R:
CTCAGGAGCTTCTTCTTCTCC
Band lengths:
208-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]