RnoEX6045144 @ rn6
Exon Skipping
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82458751-82461937:+
Coord C1 exon
chr13:82458751-82458936
Coord A exon
chr13:82459733-82459852
Coord C2 exon
chr13:82461907-82461937
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACATGTGTTTTTTCTGTTAGCAG
3' ss Score
5.21
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGTCAAATGCTCAGAATTGCACATGGACACAGCAGTCGCGATGAACTGTTCCAACCCCTGGGGAAACTTTAGCTACGGATCAACCTGTGCCTTCCACTGTCCAGAGGGGCAGTCACTGAATGGCTCTGCCAGGACAACCTGCCGAGAGGACGGTCACTGGTCAGATGCCATGCCAACCTGCCAAG
Seq A exon
CAGGGACGCTGACGATCCAGGAAGCTCTGACTTACTTGGGTGGCGCCTTGGCTTCTACAACAGGCCTGGCAGTGGGCGGGACGCTACTGGCTCTGCTAAGAAAGCGTCTCAGAAAGAAAG
Seq C2 exon
ATGATGGAAAATGCCCCCTGAACCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794-'12-14,'12-12,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCAAATGCTCAGAATTGCA
R:
GGTTCAGGGGGCATTTTCCAT
Band lengths:
210-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]