MmuEX6028824 @ mm10
Exon Skipping
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:164143894-164147349:+
Coord C1 exon
chr1:164143894-164144079
Coord A exon
chr1:164144895-164145014
Coord C2 exon
chr1:164147319-164147349
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCGTGTGTTTATTCTTTTAGCAG
3' ss Score
6.55
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CGGTCAAATGCTCCGAATTGCACATGGACACAGCAGTAGCAATGAACTGTTCCAATCCCTGGGGAAACTTTAGCTATGGATCAACCTGCACCTTCCAGTGCCCAGAGGGGCAGTCACTGAACGGCTCTGTGAGAGCAACCTGCCGAGAGGACGGTCACTGGTCAGATGCCATGCCAACCTGCCAAG
Seq A exon
CAGGGACACTGACAATCCAGGAAGCTCTGACGTACTTGGGTGGTGCAGTGGCTTCTACAACAGGCCTGGCAGTGGGCGGGACACTCCTGGCTCTGCTAAGAAAGCGTCTCAGAAAGAAAG
Seq C2 exon
ATGATGGAAAATGCCCCTTGAACCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580-'7-23,'7-18,18-23=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAAATGCTCCGAATTGC
R:
GGGTTCAAGGGGCATTTTCCA
Band lengths:
211-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types