BtaEX6069278 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50786715-50788201:+
Coord C1 exon
chr16:50786715-50786885
Coord A exon
chr16:50787220-50787351
Coord C2 exon
chr16:50788073-50788201
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTCTCAATCCGTCCCCCAGTCT
3' ss Score
6.88
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
CCCTGGAGCTGCCCGAGCTGGTCCTGGACGGCCACCTCCCCCTCGGGCGCCCCCCTCTGCACGTCGCGGTGCTCCAGGACGAGCTGCCCCACCTCTTCCAAGACGACTACGTCGGGGCTGAGGAGGAAGAGGCCGAGGCACGGGGCGAACACACACTGCAGGAAAAGTATG
Seq A exon
TCTGCCTGGACGACACCTTTGGCCCAGACTGCAGCTTGACCTGTGATGACTGCAGGAATGGGGGAACCTGCCTCCCCACGTTGGACAGCTGTGACTGCCCCGACGGCTGGACCGGGCTCGTCTGCAACGAGA
Seq C2 exon
CTTGTCCTCCGGACACCTTCGGGAAGAACTGCAGCTTCTCCTGCAGCTGTCAGAACGGCGGGACCTGTGACCCTGTGACGGGGGCCTGCCGCTGCCCCCCAGGGGTCGGCGGAGCCCACTGTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PU(66.0=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGAGCTGGTCCTG
R:
GTCACAGGGTCACAGGTCCC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]