MmuEX0028590 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154254109-154256124:+
Coord C1 exon
chr4:154254109-154254279
Coord A exon
chr4:154254542-154254673
Coord C2 exon
chr4:154255996-154256124
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTGTCTTCCTGCAGTCT
3' ss Score
11.16
5' ss Seq
AGAGTGAGG
5' ss Score
2.6
Exon sequences
Seq C1 exon
CCCTAGAAGAATCCGTGGTGGACCTGGATGGCCAGCTGCCCTTTGTCCGGCCCCTGCCCCACATTGCGGTGCTGGGGGATGAGCTTCCACAACTCTTCCAAGATGACTATGGGGCTGAGGAGGAGGCTGTGGCGGAGCTGCGGGGAGAACACACTCTCACTGAGAAGTTTG
Seq A exon
TCTGCTTGGATCACTCCTTCGGCCATGACTGCAGCCTAACCTGCGATGACTGCAGGAATGGGGGGACCTGCTTCCCGGGCCTGGATGGCTGTGACTGCCCAGAGGGCTGGACCGGGATCATCTGCAATGAGA
Seq C2 exon
CTTGTCCTCCAGACACTTTTGGGAAGAACTGTAGCTCTCCCTGCATCTGTCAGAATGGTGGGACCTGTGACCCGGTGTCAGGAGCCTGCCGCTGTCCCCCAGGCGTCAGTGGAGCCCACTGTGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'23-18,'23-17,25-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005319=Laminin_EGF=PU(63.0=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAGAAGAATCCGTGGTGG
R:
GTCACAGGTCCCACCATTCTG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types