DreEX6077674 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35450233-35453865:+
Coord C1 exon
chr15:35450233-35450463
Coord A exon
chr15:35450637-35450768
Coord C2 exon
chr15:35453737-35453865
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAAGTTTCTATGTGTGTCAGTGT
3' ss Score
4.08
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTCTCTATCAGAGGGAAGTGGAGCAGGAAGAGGAGGATGAAGATCTGTTCGGCAGTGAAGTTGAGCCGGAGGTTCTGCATTTGCCGAACTTACTCTTCCGCCGACCTCCTCAACTGCTGCATTACACCGCTGCTTTACATAGACCGTATGATGATGACACACACTCTTACTACCCAGAAGACACACACGACCCAGAACACAGAGAAGAGCTGACCACCATCAGCAAGAGTA
Seq A exon
TGTGTGAGACGGGAGTGTTTGGGGACGACTGCAGTGTGAGCTGTGAGGACTGTGTTAATGGAGGAGTCTGTGCAGCAGAGAAGGACCGCTGTGTTTGTCCACCCGGCTGGACGGGACTCATCTGTAATGACA
Seq C2 exon
CTTGTCCTGAGGGCACATATGGTGCTGAGTGTAACAGTCTGTGTGTTTGTAAGAACGGGGGCCGCTGTGACCCAGTGACCGGGAAGTGCTTGTGTCCTCCAGGGGTCCATGGTCTGCACTGCGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=68.9)
C2:
PF0005319=Laminin_EGF=PU(71.7=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACTTACTCTTCCGCCGAC
R:
CTGGAGGACACAAGCACTTCC
Band lengths:
249-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]