GgaEX6023697 @ galGal3
Exon Skipping
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:988347-989031:+
Coord C1 exon
chr21:988347-988514
Coord A exon
chr21:988676-988807
Coord C2 exon
chr21:988903-989031
Length
132 bp
Sequences
Splice sites
3' ss Seq
ACCATGTTGTCTCATTGCAGTCT
3' ss Score
8.57
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CTGTAGAGGACTCAGTGGAAGCCCTGGATGCCCGGCGCCCCATTATCCGCCCCATTCCCCATGTGGCCATCCTGCAGGATGAGCTCACCCAGCTCTTCAGCGATGACTACGAAGAGGAGGAGGAAGAGATGGAAGCAAGAGGGGAGCACACCCTGTCTGAAACATTCG
Seq A exon
TCTGTCTGGAGGACACCTTTGGCCCCGACTGCAGCCTGACATGTGAGGACTGTCAGAACGGGGGCACATGCAATGTGGAGGGGACGGGCTGTGAGTGCCCGGCCGGCTGGAGCGGGCTGCTGTGCAACCAGA
Seq C2 exon
CCTGCCCGCCTGGAACCTTCGGCAAGAACTGCAGCCAGCTCTGCCTCTGCCAGAATGGGGGTACCTGTGAGCCCGCCACCGGCACCTGCCGCTGCCCCCCTGGCGTGGCTGGGATCCACTGTGAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=71.1)
A:
PF0005319=Laminin_EGF=PU(63.0=65.9)
C2:
PF0005319=Laminin_EGF=PU(66.7=77.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTATCCGCCCCATTCCCCAT
R:
ATCCTCACAGTGGATCCCAGC
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]