DreEX6093199 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41136722-41140856:-
Coord C1 exon
chr11:41140686-41140856
Coord A exon
chr11:41140448-41140579
Coord C2 exon
chr11:41136722-41136850
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTATCATTTGTTGTGTGCAGTTT
3' ss Score
7.98
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
TGATGGAGGAGTCAGTGGAGGCGTTGAGCAGCGGTCAGACAGTCAATAAACCTGGACCAGGACCTCAGCTCACCATCCTGCAGGACTTCGATCAGATCCTGGAGAAATACGAGGACTACGAGGACGACACTGGAGAACTGCGTGCCGAGAGCACTTTAGCTGAGAAATTCA
Seq A exon
TTTGTTTGAACGATTCGTTCGGCGTTGACTGCAGTCTGTCCTGTGAGGACTGTGTGAACGGAGGAGTGTGTAACAAACACAGAAATGCCTGTGACTGTCCTGACGGATGGACTGGAGTCGTCTGTAATGAGA
Seq C2 exon
CATGCCCTGAGGGTTGGTTTGGCAGGAATTGCTCACTGTTGTGTAAGTGTAAGAACGGTGGTGTGTGTGATCCGGTGTCCGGGAGCTGTCGCTGTCCACCAGGGGTCAGTGGAGAGCTGTGTCAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=71.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAGGAGTCAGTGGAGG
R:
GATCACACACACCACCGTTCT
Band lengths:
243-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]