BtaEX6069286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50753415-50781633:+
Coord C1 exon
chr16:50753415-50753537
Coord A exon
chr16:50771702-50771824
Coord C2 exon
chr16:50781508-50781633
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTCCCCCTCCCCCAGACG
3' ss Score
11.26
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGTGAATGAGTGTGCCACTGGCAACGCAGGCTGTGAGGGTGAGTGTCACAACACCGTGGGGGGCTTCTACTGCCGCTGCCCGCCTGGCCGCCAGCTGCAGGGAGACGGCAAGACCTGCCGAG
Seq A exon
ACGTGGACGAGTGCCAGGTGCACAATGGCGGCTGCCAGCACCGGTGTGTGAACACCCCAGGCTCCTACTTCTGCGAGTGCAAGCCCGGCTTCCGTCTCCACGCGGACGGCAGGACCTGCCTGG
Seq C2 exon
CCATCAACTCCTGCGCTGTGGGCAATGGTGGCTGCCAGCACAACTGCGTCCAGCTCACAGTGACCCAGCACCGCTGCCAATGCCGGCCCGAGTTCCAGCTCCAGGAGGATGGCAGGCGCTGCGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839-'4-6,'4-5,8-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAATGAGTGTGCCACTGG
R:
CCATCCTCCTGGAGCTGGAA
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]