MmuEX6098387 @ mm10
Exon Skipping
Gene
ENSMUSG00000057751 | Megf6
Description
multiple EGF-like-domains 6 [Source:MGI Symbol;Acc:MGI:1919351]
Coordinates
chr4:154224101-154249552:+
Coord C1 exon
chr4:154224101-154224223
Coord A exon
chr4:154242402-154242524
Coord C2 exon
chr4:154249427-154249552
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCCCTCTGTCTAGATG
3' ss Score
11.01
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGCCAATGCCAACGGGGGCTGTGAGGGCCCGTGCTGCAACACCGTGGGTGGCTTTTACTGTCGCTGCCCACCCGGCTACCAGCTGCAGGGTGATGGCAAAACGTGCCAAG
Seq A exon
ATGTGGATGAATGTCGATCACACAATGGTGGTTGTCAACACAGGTGTGTGAATACCCCCGGCTCTTACCTCTGTGAGTGCAAACCCGGCTTCCGGCTCCACACAGATGGCAGGACCTGCCTGG
Seq C2 exon
CCATCAGCTCCTGCACTCTGGGAAATGGTGGCTGCCAGCATCAGTGTGTACAGCTCACCGTGACACAGCACCGCTGCCAGTGCCGGCCCCAGTACCAGCTGCAGGAGGATGGCAGGCGCTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057751-'7-10,'7-6,11-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(83.3=47.6)
A:
PF126622=cEGF=PD(12.5=7.1),PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAATGTGCCAATGCCA
R:
GACACAGCGCCTGCCATC
Band lengths:
245-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types