DreEX0087109 @ danRer10
Exon Skipping
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35430345-35441920:+
Coord C1 exon
chr15:35430345-35430467
Coord A exon
chr15:35434970-35435092
Coord C2 exon
chr15:35441795-35441920
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTGCATGTTGTCTTCACAGATA
3' ss Score
9.89
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ACATAAATGAGTGTGCGGTCAGTAATGGAGGTTGTGAAGGCACATGTTGTAACTCTATCGGCAGCTATTTCTGCAAATGTCCTGGCGGCAGTAAACTCAGAGATGATGGGAAATCTTGCCAAG
Seq A exon
ATATAGATGAGTGTGAGGAGATGAATGGCGGCTGCCAGCAGACTTGTGTGAACACACTTGGTTCCTATCACTGTGAGTGCAGTGAGGGTTTCCGCATACATGCTGATGCTCGCACATGCATAG
Seq C2 exon
CGGTGAACTCTTGCTCAGTGAAGAATGGCGGATGTGAACACAAGTGTGTGGATTTGGGAAACGAACAGTACAAGTGTGAATGTCGAAGCAACTACCAGCTCAAGAGAGACGGAAAGCACTGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216-'4-6,'4-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTGTGCGGTCAGTAATGG
R:
GTTCACAGTGCTTTCCGTCTCT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]