DreEX0005890 @ danRer10
Exon Skipping
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41153028-41174282:-
Coord C1 exon
chr11:41174160-41174282
Coord A exon
chr11:41157097-41157219
Coord C2 exon
chr11:41153028-41153153
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTATATGTGTTTCTGTGCAGATA
3' ss Score
10.69
5' ss Seq
TCGGTAAAA
5' ss Score
5.48
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGAAGAGACCAATGGAGGCTGTGAGGCTTTATGCTGTAACACCATCGGCAGCTTCTACTGCAAGTGTCCCGCAGGTCAAGAGCTCAAGGAGGATGGCAAGACCTGCCAAG
Seq A exon
ATATTGACGAGTGCCAGGTTCATAACGGCGGCTGCCAGCACACATGTGTGAACACTAGGGGTTCGTATCACTGCCAGTGTAACGCCGGCTCTCGACTGCATGTGGACGGACGCACCTGCATCG
Seq C2 exon
CTGTTCAGTCCTGCGGCGTTGGGAATGGCGGCTGTGAGCATTTCTGTGTCCAGCAGACGGCGGGTCATGTCCAGTGTCGCTGCAGACCTGATTACAGACTGGACGCGGATGGAAAACACTGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
PF146701=FXa_inhibition=WD(100=85.7)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTGTGAAGAGACCAATGG
R:
TGTGCAGTGTTTTCCATCCGC
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]