BtaEX6069752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53295805-53298173:-
Coord C1 exon
chr16:53298037-53298173
Coord A exon
chr16:53297101-53297246
Coord C2 exon
chr16:53295805-53295957
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACCACCCATTCTCTCTCCAGCCA
3' ss Score
9.32
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAATGACATTGCCCTTATCAAGCTGGCAGAGACCGTGGAATTGAGTGACACGATCCAGGTGGCCTGCCTGCCAGAGGAGGGCTCCTTGCTGCCTCAGGACTACCCCTGCTTCGTCACTGGCTGGGGCCGTCTCTACA
Seq A exon
CCAACGGCCCCATTGCCGCAGAGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATTATGCCACGTGCTCCCAGAGAGACTGGTGGGGCACCACGGTGAAGGAAACCATGGTCTGTGCCGGGGGCGATGGAGTCATCTCAGCCTGCAAC
Seq C2 exon
GGGGACTCGGGCGGCCCCCTGAACTGCCAAGCCGAGAACGGCAACTGGGATGTGCGAGGCATCGTCAGCTTCGGCTCCGGGCTGAGCTGCAACACCTTCAAGAAGCCAACGGTCTTCACCCGTGTGTCTGCATACATCGACTGGATCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
PF0008921=Trypsin=FE(20.6=100)
C2:
PF0008921=Trypsin=PD(20.6=94.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCCTTATCAAGCTGGCAG
R:
ACCGTTGGCTTCTTGAAGGTG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]