GgaEX6024234 @ galGal4
Exon Skipping
Gene
ENSGALG00000013701 | CTRC
Description
chymotrypsin-C precursor [Source:RefSeq peptide;Acc:NP_001264846]
Coordinates
chr21:4925427-4926042:-
Coord C1 exon
chr21:4925906-4926042
Coord A exon
chr21:4925685-4925830
Coord C2 exon
chr21:4925427-4925576
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTTGAGGCTGTCTTTGCAGCCA
3' ss Score
4.96
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAATGACATTGCTTTGATCAAGTTGACGGAACCAGTGCAGGAGAGTGACACCATCCAGGCTGCCTGCCTGCCGCCCAGCGGGCTGGAGCTGGAGAATGACTACCCTTGCGAGATCACTGGCTGGGGACGCCTCTGGA
Seq A exon
CCAACGGGCCGCTGGCGGAGGTCCTGCAGCAGGCCCTGCTGCCCGTGGTGGACTACGCAACGTGCTCACAGAGCGACTGGTGGGGCGGCCTGGTGAGGACCTCCATGGTCTGCGCCGGTGGTGACGGTGTCGTCTCAGGATGCAAC
Seq C2 exon
GGGGATTCGGGTGGCCCCCTGAGCTGCCAACGCAATGGCCTCTGGGAGGTGCACGGCATCGTCAGCTTCGGCTCCTCCTGGGGCTGCAACACAGCCAAGAAACCAACAGTCTTCACGCGGGTGTCCGCCTACATCGATTGGATCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
PF0008921=Trypsin=FE(20.8=100)
C2:
PF0008921=Trypsin=PD(20.3=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGACGGAACCAGTGCAG
R:
CAATCGATGTAGGCGGACACC
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]