GgaEX6024234 @ galGal3
Exon Skipping
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4995061-4995676:-
Coord C1 exon
chr21:4995540-4995676
Coord A exon
chr21:4995319-4995464
Coord C2 exon
chr21:4995061-4995210
Length
146 bp
Sequences
Splice sites
3' ss Seq
ACTTGAGGCTGTCTTTGCAGCCA
3' ss Score
4.96
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAATGACATTGCTTTGATCAAGTTGACGGAACCAGTGCAGGAGAGTGACACCATCCAGGCTGCCTGCCTGCCGCCCAGCGGGCTGGAGCTGGAGAATGACTACCCTTGCGAGATCACTGGCTGGGGACGCCTCTGGA
Seq A exon
CCAACGGGCCGCTGGCGGAGGTCCTGCAGCAGGCCCTGCTGCCCGTGGTGGACTACGCAACGTGCTCACAGAGCGACTGGTGGGGCGGCCTGGTGAGGACCTCCATGGTCTGCGCTGGTGGTGACGGTGTCGTCTCAGGATGCAAC
Seq C2 exon
GGGGATTCGGGTGGCCCCCTGAGCTGCCAACGCAATGGCCTCTGGGAGGTGCACGGCATCGTCAGCTTCGGCTCCTCCTGGGGCTGCAACACAGCCAAGAAACCAACAGTCTTCACGCGGGTGTCCGCCTACATCGATTGGATCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.2=100)
A:
PF0008921=Trypsin=FE(25.3=100)
C2:
PF0008921=Trypsin=PD(3.2=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGACGGAACCAGTGCAG
R:
CAATCGATGTAGGCGGACACC
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]