MmuEX6097658 @ mm10
Exon Skipping
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141838653-141841633:-
Coord C1 exon
chr4:141841497-141841633
Coord A exon
chr4:141840251-141840396
Coord C2 exon
chr4:141838653-141838805
Length
146 bp
Sequences
Splice sites
3' ss Seq
CATGGCTGCTCTCTCCCCAGCCA
3' ss Score
8.88
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GAACGACATCGCCATCATCAAGTTGGCTGAGCCTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGA
Seq A exon
CCAACGGTCCCATTGCTGAAGTGCTCCAGCAGGGTCTGCAGCCCATAGTGAACCACACCACGTGCTCCAGGTTGGACTGGTGGTTCATCAAGGTCCGGGAGACGATGGTGTGCGCTGGTGGTGACGGTGTCATCTCTGCCTGTAAC
Seq C2 exon
GGAGACTCTGGTGGCCCACTGAACTGCCCAGTGGAAGACGGCTTGTGGCAGGTGCATGGCATCGTGAGCTTTGGTTCCAGTAGAGGCTGCAACACATACAAGAAGCCCGTGGTCTTCACCCGTGTGTCTGCCTATATTGACTGGATCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-'15-11,'15-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.8=100)
A:
PF0008921=Trypsin=FE(20.7=100)
C2:
PF0008921=Trypsin=PD(20.7=94.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACATCGCCATCATCAAGT
R:
CCACGGGCTTCTTGTATGTGT
Band lengths:
247-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types