BtaEX6071357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012738 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr17:12588169-12606568:+
Coord C1 exon
chr17:12588169-12589221
Coord A exon
chr17:12600193-12600365
Coord C2 exon
chr17:12606088-12606568
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCCTTCTCCCAAGCCT
3' ss Score
6.31
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AAACTCAACCACCACCTGCGGCTTGTCCCCGGATTCCGCCATCCTCAAACTGAAAGCTGCAGCCAATGCCGTCCTGCAGGACAAATCGCTGACCAGGACGGAGGAGACCGTGCGATTTGAGTCCTTTTCCTCCCCTTTCAGCTCCCAGTCTGCCAGCTCCACCTTGGCAGCTTTATCCAAGAAAGTCAGCGAGAGAAGCTTGACTCCTGGCCAGGAACACCCGCCCCCGGCCAGCTCTTTCCTTTCCCTGGCTTCCATGACCTCCTCGGCGGCCCTTCTGAAAGAGGTCGCAGCGAGGGCTGCCGGGACCCTTCTGGCTGAGAAATCGTCACTGGTGCCTGAGGACCCTCTACCGCCACCGCCTTCGGAGAAGAAGCAAGAGAAAGTAACCCCGCCTCCTCCGCCGCCGCCTCCGCCGCCTCCTCCACCACCGCCACAGTCCTTGGAATTATTGTTGCTCCCAGTTCCCAAGGGAAGAGTGTCTAAGCCCTCCAACTCAG
Seq A exon
CCTCAGAAGAGGAAAGCGGAAAGCCTTTCCAGTGTCCCATATGCGGTCTGGTTATAAAACGGAAGAGTTACTGGAAGCGGCACATGGTGATTCACACAGGTTTAAAAAGTCATCAGTGTCCGCTCTGTCCGTTCCGATGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq C2 exon
GTTCATCAGCACCAGGACCGGGGAGAGACCTTTCAGTGCCAGCTCTGCCCTTTCACTTCCTCCCGCCACTTCAGCCTGAAGCTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAAGCCAAGGTGAAGGAGGAGACCCCAGACCCCGAGGCCAAGGGGCCTCCCCACCTCAGTGACAGTGCCTGCCTGGGGCAGCAAAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCATGATGAAGTCCAGCACTCCAGAGAGGACTAGCCAGGGTGGGGCTGGCGTCTCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCAACCTCCTTTCCTCTGAATGCTACCGACAGGCCAGCCAACCACACAAAGCTGAGAGAGCCCTCCGAGTTCGCGGCCAACAGTGCGTCCGCGTTGTTCAGCCAGGACATCTCTGTTAAGATGGCGTCTGATTTTCTCATGAAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012738-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.733 A=0.190 C2=0.658
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=44.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAGAAAGTAACCCCGC
R:
TCACCTTGGCTTCTGTCCTCA
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]