MmuEX6036581 @ mm9
Exon Skipping
Gene
ENSMUSG00000071064 | Zfp827
Description
zinc finger protein 827 [Source:MGI Symbol;Acc:MGI:2444807]
Coordinates
chr8:81584149-81600437:+
Coord C1 exon
chr8:81584149-81585189
Coord A exon
chr8:81594270-81594442
Coord C2 exon
chr8:81599957-81600437
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCCCTCTTCTAAGCCC
3' ss Score
8.31
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTTGCCGAACTCAACCACCACCTGTGGCCTGTCCCCTGACTCCGCCATCCTCAAACTGAAAGCCGCAGCCAATGCTGTTCTGCAGGACAAATCTCTGTCCCGGACTGAGGAGAGCCTGAGGTTTGAGTCTTTTTCCTCCCCGTTCAGCTCGCAGTCTGCCAGCTCCACCTTGGCGGCCTTGTCTAAGAAAGTGAGCGAGAGAAGTCTGACTCCGGGTCAGGAGCACCCGCCTCCTGCCAGCTCTTTCCTGTCATTGGCCTCCATGACCTCCTCCGCAGCCCTTCTGAAAGAAGTGGCTGCCAGGGCCGCGGGTAGCCTTCTGGCTGAGAAGTCATCTTTATTGCCTGATGACCCTCTACCACTGCCGTCTTCTGAGAAGAAGCCAGAAAAAGTCACCCCGCCCCCTCCCCCACCTCCTCCGACAGCGCAGCCGCCTCAGTCCTTGGAATTATTGCTACTTCCAGTTTCCAAGGGAAGAGCCTCCAAGCCCTCCAATTCAG
Seq A exon
CCCCAGAAGAAGAAAGCGGGAAGCCATTCCAATGTCCAATATGTGGTTTGGTTATAAAAAGGAAGAGTTACTGGAAGCGGCACATGGTGATTCACACGGGCTTAAAGAGTCATCAGTGTCCACTCTGTCCATTCCGGTGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq C2 exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTGCACATGCGTTGCCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCCAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCTTGAATGCTGCCGACAGGCCCGCCAACCACACAAAGCTGAAAGACCCCTCCGAGTATGTGTCCAACAGTGCAGCAGTATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071064-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.666 A=0.173 C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=44.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGATGACCCTCTACCACT
R:
CAACGCATGTGCAGTTTCAGG
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: