RnoEX0101718 @ rn6
Exon Skipping
Gene
ENSRNOG00000011697 | Zfp827
Description
zinc finger protein 827 [Source:NCBI gene;Acc:291940]
Coordinates
chr19:32512909-32528965:-
Coord C1 exon
chr19:32527921-32528965
Coord A exon
chr19:32518768-32518940
Coord C2 exon
chr19:32512909-32513389
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCCCTCTTCCAAGCCC
3' ss Score
6.66
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTGGTTGCCGAACTCAACCACCACCTGTGGCCTGTCCCCCGACTCCGCCATCCTCAAACTGAAAGCCGCAGCCAACGCCGTTCTGCAGGACAAGTCTCTGTCCCGGACAGAGGACAGCCTGAGGTTTGAGTCCTTTTCCTCCCCGTTCAGCTCCCAGTCGGCCAGCTCCACCTTGGCGGCTCTGTCTAAGAAAGTGAGTGAGAGAAGTCTGACTCCGGGTCAGGAGCACCCGCCTCCTGCCAGCTCTTTCCTGTCTTTGGCCTCCATGACCTCCTCCGCAGCCCTTCTCAAAGAAGTGGCTGCCAGGGCCGCCGGTAGCCTTCTGGCTGAGAAGTCATCTTTATTGCCTGATGACCCTCTACCACTGCCGCCTTCTGAGAAGAAGCCAGAAAAAGTCACCCCGCCCCCTCCCCCACCACCTCCGCCAGCACAGCCTCAGTCCTTGGAATTATTGCTACTTCCGGTTCCCAAGGGAAGAGTCTCCAAGCCCTCCAATTCAG
Seq A exon
CCCCAGAAGAAGAAAGCGGGAAGCCATTCCAATGTCCAATATGTGGTCTGGTTATAAAAAGGAAGAGCTACTGGAAGCGGCATATGGTGATCCACACAGGCTTAAAAAGTCATCAGTGTCCCCTCTGTCCATTCCGGTGTGCTCGCAAGGACAATCTCAAATCCCACATGAAG
Seq C2 exon
GTTCATCAGCATCAGGACCGGGGAGAGACTTTTCAGTGCCAGCTGTGCCCTTTCACATCCTCACGCCACTTCAGCCTGAAACTACACATGCGCTGTCATCAGCACTTCCTGAGGACAGAGGCCAAGGTGAAGGAGGAGATCCTAGACCCAGATGTCAAGGGATCTCCCCACCTCAGTGACAGTGGCTGCCTGGGGCAGCAGAGGGAAGGAGGAGGGACAGAGCTAGTGGGGACCGTGATGACGTCTAACACGCCAGAGAGGACTGGCCAGGGTGGGGCTGGCGTTGCACCTTTGCTGGTGAAGGAGGAGCCCAAGGAAGATAACGGCCTGCCCACCTCCTTTACCCTGAATGCTGCCGACAGGTCCGCCAACCACACAAAGCCGAAAGACCCCTCCGAGTTTGTGCCCAACAGTGCGGCAGCATTGTTCAGCCAGGACATCTCGGTTAAGATGGCCTCCGATTTTCTCATGAAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011697-'0-10,'0-7,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.190 C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=44.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTTCTGAGAAGAAGCCAG
R:
CCTCTGTCCTCAGGAAGTGCT
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]