GgaEX0014817 @ galGal4
Exon Skipping
Gene
ENSGALG00000009982 | ZNF827
Description
zinc finger protein 827 [Source:HGNC Symbol;Acc:HGNC:27193]
Coordinates
chr4:30720685-30737948:-
Coord C1 exon
chr4:30736938-30737948
Coord A exon
chr4:30731539-30731711
Coord C2 exon
chr4:30720685-30721165
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCCCCTTCTGCTAAGCCT
3' ss Score
3.48
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
TGCAAGTAGTCACTTTATATGGAATCAAGGTAAGTGGTTGCCAAACTCAACCACCGCCTGTGGTTTGTCCCCCGATTCAGCTATCCTGAAACTGAAAGCCGCAGCCAATGCTGTTCTGCAGGACAGATCTCTTTCAAGGACTGAAGATAATATAAGGTTTGAATCCTTTTCCTCACCTTTTAGCTCTCAGTCTGCCAGCTCCACATTAGCAGCTTTATCAAAAAAAGTGAGTGAAAGAAGCATGACTCCTGGGCAGGAGCACCCGCCTCCGGCTAGTTCTTTCCTTTCTCTGGCTTCTATGACCTCTTCAGCTGCCCTGCTCAAGGAGGTTGCTGCAAGGGCTGCAGGCACCCTGTTGGCAGAGAAGAAGAAATCACTGGTTGCTGAGGATCCCCTGCAGCTTTCAGAGATGAAGCAAGAGAAAGCAACTCCACCACAGTCTTTGGAATTATTGTTACTGCCAGTCCCTAAGGGAAGAACATCCAAACCCACCAGTACAG
Seq A exon
CCTCAGAAGAAGAAGGAGGAAAACCTTTCCAGTGTCCAATCTGTGGTTTGGTTATCAAGAGGAAGAGTTACTGGAAACGGCACATGGTGATTCATACAGGTTTGAAAAGTCATCAGTGTCCGCTCTGTCCATTTCGCTGTGCGCGTAAGGACAATCTCAAATCACACATGAAG
Seq C2 exon
GTTCATCAGCACCAGGACAGGGGTGAGACCTTTCAATGCCAGCTATGCCCTTTTACCTCCTCCCGCCACTTCAGCCTGAAACTCCATATGCGTTGCCATCAGCATTTCCTCAGGACAGAATCCAAAGTGAAGGAGGAAATACCAGAAACTGAGGTGAAGGGGTCACCACAGCTAAATAGTGACTCCTGCCCGGGACCACAGAGGGAAGGAGTTGGACCTGACCTTATGGGATCAGCATCTGTATCTAAAACATCTGATGTGGCTGGGCAGGCTAGTGGAGGTATTCCACCTTTACTAGTGAAAGAAGAGCCCAAAGATGACAATGGCATCTCAGCTGCACCTTTTGCTCTTAGCACTGTTGACAGAGCCCCCAACAACACAAAGCTGAAAGACTCTGACTTTGTGGCCAGTACAGCATCAGCACTATTCAGCCAAGACATCTCTGTCAAGATGGCATCAGATTTTCTTATGAAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009982-'2-8,'2-3,5-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.155 C2=0.584
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=44.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCTCTTCAGCTGCCCT
R:
GGCATTGAAAGGTCTCACCCC
Band lengths:
243-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]