BtaEX6072201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54161423-54164535:-
Coord C1 exon
chr17:54164359-54164535
Coord A exon
chr17:54163129-54163254
Coord C2 exon
chr17:54161423-54161595
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGCCTGACTTCTCTGATAGGTC
3' ss Score
9.17
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
ATTGACATAGTTAACAAAATCTTTGTCCAGAACCTCGACAACCCCCCGTTGTATAAGAACCATCCCCCGGTGGCAGGTGCAATCTACTGGGAACGGTCCCTGTTCTTCCGGATTAAGCACACCATCCTCAGATTTCAAGAAGTAGAGGAGATCCTGGACAGTGATGGAGGAAGAGAA
Seq A exon
GTCAAACAAAAATATTTGGAACTGGGTAGGATGATGAAAGACTATGAAGATAGAAAGTATGAGCAGTGGAGAGAGACGACGGAACAGATCCTGCCAACTCTCATGAAGAAGAGTCTGCTTACTAAG
Seq C2 exon
ACTTCTGCCGCTGGTGATGATGCCACAAACCCTGACAGAGTGGCTGCTTTCTCAATCAACTTTTCACCTGCTCTCAGGGAGATTATTAATGAAACAAAGTACTTGGAACAGCTAGGTTTCCCTGTCCCCGAATTAGCAAGGAACATTGCTCTCCAGGAGGACAAATTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(25.7=100)
A:
PF083857=DHC_N1=FE(18.1=100)
C2:
PF083857=DHC_N1=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAATCTACTGGGAACGG
R:
CTTGCTAATTCGGGGACAGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]