DreEX6011143 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27718787-27721393:+
Coord C1 exon
chr5:27718787-27718963
Coord A exon
chr5:27720910-27721083
Coord C2 exon
chr5:27721236-27721393
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCTGATGAATAGGTG
3' ss Score
6.09
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGGTCCTTATAAATGACATATTTGTGAAGTTCAAGGATAATCCACCTCTGAGTAAGAATCATCCTCCAATGGCAGGAGCTATTATTTGGCAACGTTTCTTGCTAGACCAAATGCGATATCCCATGAAACGCTTCAGGGAGGATCGTGATTTGATGAACAATCAAGAAGGGAAAGCA
Seq A exon
GTGGAATCCAAATTTATAGAGGTGGCTTCACGTATGAGGCAGTATGAGGTGGATCTCTATAACAAATGGAAAGCAGATACTAATCAAACTCTGCCCATTCTCATGAGGAAAAGCTTACTGGTCATGGTCAACAGTTACGGGACTGTCTGTGCAGACTCCACACGTCATCGTACT
Seq C2 exon
GGCTCGGAGAAGGTTTTGGAAAGGGATGTGCGCTTTTCTGTTAATTTTCCTCCTGAACTGCAAGAAATCATATCTGAGGCCAAATGTCTGGACCGTATAGGCATAGTATTACCAGATGAGCTGCAAAATGTTGCTCTGCAGGAGGAGGTGTTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.9=100)
A:
PF083857=DHC_N1=FE(9.7=100)
C2:
PF083857=DHC_N1=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACGTTTCTTGCTAGACC
R:
TCAGAAACACCTCCTCCTGCA
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]