DreEX6011144 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27718517-27721083:+
Coord C1 exon
chr5:27718517-27718687
Coord A exon
chr5:27718787-27718963
Coord C2 exon
chr5:27720910-27721083
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTGTTCCTGCATAGATG
3' ss Score
8.45
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GTAATTGAAAGAGAGGCCATCACTTTTATTGATCACTCCTTCAAGACGCTGCGCTCCTCATCTGCAGCCTTTGATCTGCTGCTGAAATTCAAGAACATCCGCTGCAGAGATGCCATCAACGATCAGCTGATGAAAAAGTTCAGCGATATTCTTGCTCAGTACTGTAAAGAG
Seq A exon
ATGGTCCTTATAAATGACATATTTGTGAAGTTCAAGGATAATCCACCTCTGAGTAAGAATCATCCTCCAATGGCAGGAGCTATTATTTGGCAACGTTTCTTGCTAGACCAAATGCGATATCCCATGAAACGCTTCAGGGAGGATCGTGATTTGATGAACAATCAAGAAGGGAAAGCA
Seq C2 exon
GTGGAATCCAAATTTATAGAGGTGGCTTCACGTATGAGGCAGTATGAGGTGGATCTCTATAACAAATGGAAAGCAGATACTAATCAAACTCTGCCCATTCTCATGAGGAAAAGCTTACTGGTCATGGTCAACAGTTACGGGACTGTCTGTGCAGACTCCACACGTCATCGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.5=100)
A:
PF083857=DHC_N1=FE(9.9=100)
C2:
PF083857=DHC_N1=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACATCCGCTGCAGAGA
R:
GATGACGTGTGGAGTCTGCAC
Band lengths:
251-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]