GgaEX1020147 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4897521-4899001:-
Coord C1 exon
chr15:4898901-4899001
Coord A exon
chr15:4897990-4898166
Coord C2 exon
chr15:4897521-4897643
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTATTCTCTTCTAGGTT
3' ss Score
11.84
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
TTGACATGCTGTTGAACTTCAAAAACACCCGCTGTCGTGAAACAATTAATAAGCAGCTGATGATGAAGTTCAATGACATATTGGACCAATACTGTAAAGAG
Seq A exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
Seq C2 exon
GTCAAGCAAATATATCTTAAAGTGGCCAAGAGGATGAAAGAATATGAAGATCAGAAATATGATCAGTGGAGACATGAGACAGAAAAGATGCTCCCACTGTTATTGGAAAAAACTCTGCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'11-21,'11-20,12-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(25.4=100)
C2:
PF083857=DHC_N1=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATGCTGTTGAACTTCAA
R:
TTTCCAATAACAGTGGGAGCA
Band lengths:
210-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]