MmuEX6021095 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125226913-125231256:+
Coord C1 exon
chr5:125226913-125227107
Coord A exon
chr5:125228761-125228937
Coord C2 exon
chr5:125231131-125231256
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCGCCTGCTTTGCTTTCCAGATC
3' ss Score
9.65
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
Seq A exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
Seq C2 exon
GTGAAGCAGAGATACCTGGAGGTGGGGAGGAAGATGAAGGAGTATGAAGACGGGAAGTATGAGCATTGGAAGGAGACCACAGAGCAGAGCCTCCCAACCCTCATGAAGAAGAGCCTGCTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'10-12,'10-11,12-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.4=100),PF083857=DHC_N1=PU(4.0=13.6)
A:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(26.1=100)
C2:
PF083857=DHC_N1=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGACGATGTCCTTGGCC
R:
GCAGGCTCTTCTTCATGAGGG
Band lengths:
249-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: