HsaEX1011854 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123793942-123799371:+
Coord C1 exon
chr12:123793942-123794112
Coord A exon
chr12:123796656-123796832
Coord C2 exon
chr12:123799246-123799371
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTGATTGCTTTTCAGATT
3' ss Score
8.59
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTTATTGAGAAAGAAGCAAAACATTTTATTGATGAATCTTTTAAGACGCTTCGATCTGCTGAAGCAGCATTTGACATGCTTTTAAAATTTAAGCACATTCGTTCACGGGAGGCTGTTAATCGACAAATGATGATGAAATTTAATGATATTCTTGCACAGTACTGTAAAGAG
Seq A exon
ATTGACATCATTAATAAAATCTTTGTCCAGAACCTTGAAAATCCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAG
Seq C2 exon
GTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATGAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'14-18,'14-17,15-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.7=100)
A:
PF083857=DHC_N1=FE(26.2=100)
C2:
PF083857=DHC_N1=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCTTCGATCTGCTGAAG
R:
GGCTCTTCTTCATGAGAGCTGG
Band lengths:
243-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains