GgaEX1020147 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4944156-4945733:-
Coord C1 exon
chr15:4945563-4945733
Coord A exon
chr15:4944652-4944828
Coord C2 exon
chr15:4944156-4944305
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTATTCTCTTCTAGGTT
3' ss Score
11.84
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
AGTATTGAAGAAGATGCCAAAAACTTTATTGATAAATCTTTTAAGACTCTTCGATCAGCAGAAACTGCATTTGACATGCTGTTGAACTTCAAAAACACCCGCTGTCGTGAAACAATTAATAAGCAGCTGATGATGAAGTTCAATGACATATTGGACCAATACTGTAAAGAG
Seq A exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
Seq C2 exon
GTCAAGCAAATATATCTTAAAGTGGCCAAGAGGATGAAAGAATATGAAGATCAGAAATATGATCAGTGGAGACATGAGACAGAAAAGATGCTCCCACTGTTATTGGAAAAAACTCTGCTGATAGTCATTACTGATGGGCCGGCAACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.8=100)
A:
PF083857=DHC_N1=FE(10.1=100)
C2:
PF083857=DHC_N1=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGAACTTCAAAAACACCC
R:
AGTTGCCGGCCCATCAGTAAT
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]