BtaEX6072200 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54163129-54167945:-
Coord C1 exon
chr17:54167746-54167945
Coord A exon
chr17:54164359-54164535
Coord C2 exon
chr17:54163129-54163254
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATGTCTGATTGCTTTGCAGATT
3' ss Score
10.39
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GACAGGTCGTGGAGGAATTCTACAACATATTTGGTCCGGAGCTGAAAGCGGTGACTGGGGATCCCAAGCGCATCGATGATGTCCTGTGCAGGGTGGACGGCCTGGTCACCCCCATGGAAAACCTGACCTTTGACCCCTTCAGCATCAAGTGCTCCCAGTACTGGAAATATGTGATGGACGACTTCAAGATCGAAGTCCTG
Seq A exon
ATTGACATAGTTAACAAAATCTTTGTCCAGAACCTCGACAACCCCCCGTTGTATAAGAACCATCCCCCGGTGGCAGGTGCAATCTACTGGGAACGGTCCCTGTTCTTCCGGATTAAGCACACCATCCTCAGATTTCAAGAAGTAGAGGAGATCCTGGACAGTGATGGAGGAAGAGAA
Seq C2 exon
GTCAAACAAAAATATTTGGAACTGGGTAGGATGATGAAAGACTATGAAGATAGAAAGTATGAGCAGTGGAGAGAGACGACGGAACAGATCCTGCCAACTCTCATGAAGAAGAGTCTGCTTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523-'11-15,'11-14,13-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.9=100),PF083857=DHC_N1=PU(4.0=13.4)
A:
PF083857=DHC_N1=FE(25.7=100)
C2:
PF083857=DHC_N1=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGGTCCGGAGCTGAAAGC
R:
TTCCGTCGTCTCTCTCCACTG
Band lengths:
256-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]