MmuEX6021094 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124748391-124753340:+
Coord C1 exon
chr5:124748391-124748567
Coord A exon
chr5:124750761-124750886
Coord C2 exon
chr5:124753168-124753340
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTGCTCCCATTCCCGGCTAGGTG
3' ss Score
9.38
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
Seq A exon
GTGAAGCAGAGATACCTGGAGGTGGGGAGGAAGATGAAGGAGTATGAAGACGGGAAGTATGAGCATTGGAAGGAGACCACAGAGCAGAGCCTCCCAACCCTCATGAAGAAGAGCCTGCTCACCAAG
Seq C2 exon
AATATCATCACAGCTGAGGACTCAGCGATCATAGACAGGGGGACCACGTTTATTATCAACTTCTCTCCCGTTCTTAAAGAGATTATTAATGAAACCAAGTACTTAGAGCAGCTGGGATTCACCATCCCTGAACTGGCGAGGAACGTGGCCCTCCAGGAAGACAAATTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'15-16,'15-15,16-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.1=100)
A:
PF083857=DHC_N1=FE(18.1=100)
C2:
PF083857=DHC_N1=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTATACAAGAACCACCC
R:
TGGTGAATCCCAGCTGCTCTA
Band lengths:
257-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types