HsaEX6069975 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124281203-124284935:+
Coord C1 exon
chr12:124281203-124281379
Coord A exon
chr12:124283793-124283918
Coord C2 exon
chr12:124284763-124284935
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGCTTGAATTCTTTGATAGGTC
3' ss Score
7.32
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ATTGACATCATTAATAAAATCTTTGTCCAGAACCTTGAAAATCCACCACTGTATAAGAATCACCCTCCAGTAGCAGGTGCAATATACTGGGAACGATCTCTGTTCTTTCGGATTAAGCATACCATCCTCCGATTTCAAGAGGTACAAGAGATACTGGACAGTGATCGAGGACAGGAG
Seq A exon
GTCAAACAAAAATATTTGGAAGTAGGTAGGACAATGAAGGAGTATGAAGACAGAAAGTATGAGCAGTGGATGGAGGTGACGGAGCAGGTGCTGCCAGCTCTCATGAAGAAGAGCCTTTTGACCAAG
Seq C2 exon
TCTTCCATCGCCACAGAGGAGCCTTCGACTTTAGAAAGGGGAGCTGTTTTTGCAATCAACTTTTCACCGGCTCTCAGAGAGATTATTAATGAAACAAAGTACTTAGAGCAGCTGGGGTTCACTGTCCCTGAATTAGCAAGAAATGTTGCTCTCCAGGAAGACAAATTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(26.2=100)
A:
PF083857=DHC_N1=FE(18.6=100)
C2:
PF083857=DHC_N1=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCCTCCAGTAGCAGGTG
R:
ATTCAGGGACAGTGAACCCCA
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)